Package index
-
as_tibble(<epi_df>)
- Convert to tibble
-
as_tsibble(<epi_df>)
- Convert to tsibble format
-
autoplot(<epi_df>)
- Automatically plot an epi_df
-
complete(<epi_df>)
- Complete epi_df
-
as_epi_df()
new_epi_df()
epi_df
object
-
group_epi_df()
- Group an
epi_df
object by default keys
-
is_epi_df()
- Test for
epi_df
format
-
print(<epi_df>)
group_by(<epi_df>)
ungroup(<epi_df>)
group_modify(<epi_df>)
unnest(<epi_df>)
- Base S3 methods for an
epi_df
object
-
sum_groups_epi_df()
- Aggregate an
epi_df
object
-
summary(<epi_df>)
- Summarize
epi_df
object
-
geo_column_names()
- potential geo_value columns
-
time_column_names()
- potential time_value columns
-
version_column_names()
- potential version columns
-
epi_slide()
- Slide a function over variables in an
epi_df
object
-
epi_slide_mean()
- Optimized slide function for performing rolling averages on an
epi_df
object
-
epi_slide_sum()
- Optimized slide function for performing rolling sums on an
epi_df
object
-
epi_slide_opt()
- Optimized slide function for performing common rolling computations on an
epi_df
object
-
epi_cor()
- Compute correlations between variables in an
epi_df
object
-
growth_rate()
- Estimate growth rate
-
detect_outlr()
- Detect outliers
-
detect_outlr_rm()
- Detect outliers based on a rolling median
-
detect_outlr_stl()
- Detect outliers based on an STL decomposition
-
archive_cases_dv_subset
- Subset of daily doctor visits and cases in archive format
-
clone()
- Clone an
epi_archive
object.
-
new_epi_archive()
validate_epi_archive()
as_epi_archive()
epi_archive
object
-
epix_slide()
- Slide a function over variables in an
epi_archive
orgrouped_epi_archive
-
epix_truncate_versions_after()
- Filter an
epi_archive
object to keep only older versions
-
group_by(<epi_archive>)
group_by(<grouped_epi_archive>)
group_by_drop_default(<grouped_epi_archive>)
group_vars(<grouped_epi_archive>)
groups(<grouped_epi_archive>)
ungroup(<grouped_epi_archive>)
is_grouped_epi_archive()
group_by
and related methods forepi_archive
,grouped_epi_archive
-
print(<epi_archive>)
- Print information about an
epi_archive
object
-
revision_summary()
- A function to describe revision behavior for an archive
-
epix_as_of()
- Generate a snapshot from an
epi_archive
object
-
epix_fill_through_version()
- Fill
epi_archive
unobserved history
-
epix_merge()
- Merge two
epi_archive
objects
-
epix_slide()
- Slide a function over variables in an
epi_archive
orgrouped_epi_archive
-
epix_truncate_versions_after()
- Filter an
epi_archive
object to keep only older versions
-
group_by(<epi_archive>)
group_by(<grouped_epi_archive>)
group_by_drop_default(<grouped_epi_archive>)
group_vars(<grouped_epi_archive>)
groups(<grouped_epi_archive>)
ungroup(<grouped_epi_archive>)
is_grouped_epi_archive()
group_by
and related methods forepi_archive
,grouped_epi_archive
-
archive_cases_dv_subset
- Subset of daily doctor visits and cases in archive format
-
incidence_num_outlier_example
- Subset of JHU daily cases from California and Florida
-
jhu_csse_county_level_subset
- Subset of JHU daily cases from counties in Massachusetts and Vermont
-
jhu_csse_daily_subset
- Subset of JHU daily state cases and deaths
-
autoplot(<epi_df>)
- Automatically plot an epi_df
-
compactify
- Compactify
-
epiprocess-package
epiprocess
- epiprocess: Tools for basic signal processing in epidemiology
-
max_version_with_row_in()
max(x$version)
, with error ifx
has 0 rows
-
next_after()
- Get the next possible value greater than
x
of the same type
-
guess_period()
experimental - Use max valid period as guess for
period
oftime_values
-
key_colnames()
- Grab any keys associated to an epi_df