Package index
-
as_epi_df()
is_epi_df()
new_epi_df()
- Test for
epi_df
format
-
print(<epi_df>)
summary(<epi_df>)
group_by(<epi_df>)
ungroup(<epi_df>)
group_modify(<epi_df>)
unnest(<epi_df>)
- Base S3 methods for an
epi_df
object
-
group_epi_df()
- Group an
epi_df
object by default keys
-
autoplot(<epi_df>)
- Automatically plot an epi_df
-
complete(<epi_df>)
- "Complete" an
epi_df
, adding missing rows and/or replacingNA
s
-
epi_slide()
- Slide a function over variables in an
epi_df
object
-
epi_slide_opt()
epi_slide_mean()
epi_slide_sum()
- Optimized slide functions for common cases
-
sum_groups_epi_df()
- Aggregate an
epi_df
object
-
epi_cor()
- Compute correlations between variables in an
epi_df
object
-
detect_outlr()
detect_outlr_rm()
detect_outlr_stl()
- Detect outliers
-
growth_rate()
- Estimate growth rate
-
as_tibble(<epi_df>)
- Convert to tibble
-
as_tsibble(<epi_df>)
- Convert to tsibble format
-
new_epi_archive()
validate_epi_archive()
as_epi_archive()
epi_archive
object
-
print(<epi_archive>)
- Print information about an
epi_archive
object
-
clone()
- Clone an
epi_archive
object.
-
group_by(<epi_archive>)
group_by(<grouped_epi_archive>)
group_by_drop_default(<grouped_epi_archive>)
group_vars(<grouped_epi_archive>)
groups(<grouped_epi_archive>)
ungroup(<grouped_epi_archive>)
is_grouped_epi_archive()
group_by
and related methods forepi_archive
,grouped_epi_archive
-
epix_as_of()
- Generate a snapshot from an
epi_archive
object
-
epix_slide()
- Slide a function over variables in an
epi_archive
orgrouped_epi_archive
-
epix_merge()
- Merge two
epi_archive
objects
-
revision_summary()
- A function to describe revision behavior for an archive.
-
epix_fill_through_version()
- Fill
epi_archive
unobserved history
-
epix_truncate_versions_after()
- Filter an
epi_archive
object to keep only older versions
-
cases_deaths_subset
- Subset of JHU daily state COVID-19 cases and deaths from 6 states (from epidatasets)
-
archive_cases_dv_subset
- Subset of daily COVID-19 doctor visits and cases from 6 states in archive format (from epidatasets)
-
covid_incidence_county_subset
- Subset of JHU daily COVID-19 cases from counties in Massachusetts and Vermont (from epidatasets)
-
covid_incidence_outliers
- Subset of JHU daily COVID-19 cases from New Jersey and Florida (from epidatasets)
-
covid_case_death_rates_extended
- JHU daily COVID-19 cases and deaths rates from all states (from epidatasets)